crisprzip package
Submodules
- crisprzip.coarsegrain module
- crisprzip.kinetics module
- crisprzip.matrix_expon module
- crisprzip.nucleic_acid module
GuideTargetHybridGuideTargetHybrid.guideGuideTargetHybrid.targetGuideTargetHybrid.stateGuideTargetHybrid.apply_point_mut()GuideTargetHybrid.bp_mapGuideTargetHybrid.find_mismatches()GuideTargetHybrid.from_cas9_offtarget()GuideTargetHybrid.from_cas9_protospacer()GuideTargetHybrid.get_mismatch_pattern()GuideTargetHybrid.set_rloop_state()
MismatchPatternNearestNeighborModelNearestNeighborModel.energy_unitNearestNeighborModel.convert_units()NearestNeighborModel.dna_dna_paramsNearestNeighborModel.dna_dna_params_fileNearestNeighborModel.dna_opening_energy()NearestNeighborModel.energy_unitNearestNeighborModel.get_hybridization_energy()NearestNeighborModel.load_data()NearestNeighborModel.rna_dna_paramsNearestNeighborModel.rna_dna_params_fileNearestNeighborModel.rna_duplex_energy()NearestNeighborModel.set_energy_unit()NearestNeighborModel.set_temperature()NearestNeighborModel.temperature
TargetDnafind_average_mm_penalties()find_mismatches_cached()format_point_mutations()get_hybridization_energy()get_na_energies_cached()make_hybr_energy_func()
- crisprzip.plotting module
SearcherPlotterSearcherPlotter.label_styleSearcherPlotter.line_styleSearcherPlotter.plot_internal_rates()SearcherPlotter.plot_mismatch_penalties()SearcherPlotter.plot_off_target_landscape()SearcherPlotter.plot_on_target_landscape()SearcherPlotter.prepare_landscape_canvas()SearcherPlotter.prepare_landscape_line()SearcherPlotter.prepare_rates_canvas()SearcherPlotter.prepare_rates_line()SearcherPlotter.tick_styleSearcherPlotter.title_styleSearcherPlotter.update_mismatches()SearcherPlotter.update_on_target_landscape()SearcherPlotter.update_rates()SearcherPlotter.update_solution_energies()